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I prefer a python-based process to run simulations and plot channels.

A *.snp file does not have to have channels in it. I prefer not to include channels when making an *.snp file or clear the channel 'memory' from pre-defined ones. Use the Channel Wizard and subsystems to create channels needed for the study. The 'final' channels definition is in a (multiple) script file(s) (IDV or PY), added by the run-simulation script.

Plotting is done using Channels (a python plotting tool I developed using Matplotlib and dyntools for the data extraction). Search the forum for 'Channels - tool to process out files' for more information. In addition to 'plain' plots to pdf, it also supports 'only-in-violation' plots and other minor features not found in pssplt.