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The file ieee_25bus.sub contains two subsystem definitions that are the same, they cannot be used at the same time for a TLTG activity:

/AN EXAMPLE SUBSYSTEM FILE USED IN N-1-1 ANALYSIS DEMONSTRATION

SUBSYSTEM CTRLAR_BASE
  AREAS  1 5
END

SUBSYSTEM CTRLAR_CON
  AREAS  1 5
END

END

For TLTG, the definition of sending and receiving regions cannot contain the same data. Just add new definitions of subsystems exclusive of each other to be used in creating the dfx file, like:

SUBSYSTEM Area1
  AREA  1
END
SUBSYSTEM Area5
  AREA  5
END

In v.34, check the POM.pdf manual, "9.1.2. Subsystem Description Data File Contents"